3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
6YST|1|a|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YST_149 not in the Motif Atlas
Homologous match to IL_5J7L_040
Geometric discrepancy: 0.0986
The information below is about IL_5J7L_040
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

6YST|1|a|G|925
6YST|1|a|G|926
6YST|1|a|G|927
*
6YST|1|a|U|1390
6YST|1|a|U|1391

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain w
Transfer RNA; tRNA
Chain x
mRNA

Coloring options:


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