IL_6YST_168

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

6YST|1|a|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_168 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.2758

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6YST|1|a|G|1405
6YST|1|a|U|1406
6YST|1|a|5MC|1407
6YST|1|a|A|1408
6YST|1|a|C|1409
*
6YST|1|a|G|1491
6YST|1|a|A|1492
6YST|1|a|A|1493
6YST|1|a|G|1494
6YST|1|a|U|1495
6YST|1|a|C|1496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12

Chain y

Alternative stalled-ribosome rescue factor B