IL_6YST_176

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUC*GAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_176 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.3402

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6YST|1|A|U|1485
6YST|1|A|U|1486
6YST|1|A|U|1487
6YST|1|A|C|1488
*
6YST|1|A|G|1501
6YST|1|A|A|1502
6YST|1|A|A|1503
6YST|1|A|A|1504

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2