Loop IL_6YST

3D structure

PDB id: 6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: UGAUGUGUAGGAUAGGUGGGAG*CGACCUUGAAAUACCACCCUUUA
Length: 45 nucleotides
Bulged bases: 6YST|1|A|U|2111, 6YST|1|A|G|2112, 6YST|1|A|U|2113, 6YST|1|A|G|2115, 6YST|1|A|A|2117, 6YST|1|A|U|2118, 6YST|1|A|G|2120, 6YST|1|A|A|2126, 6YST|1|A|G|2168, 6YST|1|A|A|2169, 6YST|1|A|U|2172, 6YST|1|A|A|2176, 6YST|1|A|C|2177, 6YST|1|A|C|2178, 6YST|1|A|C|2179
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6YST|1|A|U|2106
6YST|1|A|G|2107
6YST|1|A|A|2108
6YST|1|A|U|2109
6YST|1|A|G|2110
6YST|1|A|U|2111
6YST|1|A|G|2112
6YST|1|A|U|2113
6YST|1|A|A|2114
6YST|1|A|G|2115
6YST|1|A|G|2116
6YST|1|A|A|2117
6YST|1|A|U|2118
6YST|1|A|A|2119
6YST|1|A|G|2120
6YST|1|A|G|2121
6YST|1|A|U|2122
6YST|1|A|G|2123
6YST|1|A|G|2124
6YST|1|A|G|2125
6YST|1|A|A|2126
6YST|1|A|G|2127
*
6YST|1|A|C|2161
6YST|1|A|G|2162
6YST|1|A|A|2163
6YST|1|A|C|2164
6YST|1|A|C|2165
6YST|1|A|U|2166
6YST|1|A|U|2167
6YST|1|A|G|2168
6YST|1|A|A|2169
6YST|1|A|A|2170
6YST|1|A|A|2171
6YST|1|A|U|2172
6YST|1|A|A|2173
6YST|1|A|C|2174
6YST|1|A|C|2175
6YST|1|A|A|2176
6YST|1|A|C|2177
6YST|1|A|C|2178
6YST|1|A|C|2179
6YST|1|A|U|2180
6YST|1|A|U|2181
6YST|1|A|U|2182
6YST|1|A|A|2183

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain k: 30S ribosomal protein S11
Chain w: Transfer RNA; tRNA

IL_6YST_181