IL_6YST_182

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCUUUGAAGUG*CAUGGAGCC

Length

21 nucleotides

Bulged bases

6YST|1|A|U|2132, 6YST|1|A|G|2133, 6YST|1|A|A|2135, 6YST|1|A|U|2155, 6YST|1|A|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YST|1|A|G|2127
6YST|1|A|G|2128
6YST|1|A|C|2129
6YST|1|A|U|2130
6YST|1|A|U|2131
6YST|1|A|U|2132
6YST|1|A|G|2133
6YST|1|A|A|2134
6YST|1|A|A|2135
6YST|1|A|G|2136
6YST|1|A|U|2137
6YST|1|A|G|2138
*
6YST|1|A|C|2153
6YST|1|A|A|2154
6YST|1|A|U|2155
6YST|1|A|G|2156
6YST|1|A|G|2157
6YST|1|A|A|2158
6YST|1|A|G|2159
6YST|1|A|C|2160
6YST|1|A|C|2161

Current chains

Chain A

23S ribosomal RNA

Nearby chains