IL_6YSU_049

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSU_049 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.2244

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6YSU|1|A|U|1415
6YSU|1|A|G|1416
*
6YSU|1|A|C|1582
6YSU|1|A|A|1583
6YSU|1|A|U|1584
6YSU|1|A|C|1585
6YSU|1|A|A|1586
6YSU|1|A|G|1587

Current chains

Chain A

23S ribosomal RNA

Nearby chains