IL_6YSU_084

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUGUGUAGGAUAGGUGG*CCACCCUUUA

Length

29 nucleotides

Bulged bases

6YSU|1|A|G|2112, 6YSU|1|A|U|2113, 6YSU|1|A|G|2115, 6YSU|1|A|C|2178, 6YSU|1|A|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSU|1|A|U|2106
6YSU|1|A|G|2107
6YSU|1|A|A|2108
6YSU|1|A|U|2109
6YSU|1|A|G|2110
6YSU|1|A|U|2111
6YSU|1|A|G|2112
6YSU|1|A|U|2113
6YSU|1|A|A|2114
6YSU|1|A|G|2115
6YSU|1|A|G|2116
6YSU|1|A|A|2117
6YSU|1|A|U|2118
6YSU|1|A|A|2119
6YSU|1|A|G|2120
6YSU|1|A|G|2121
6YSU|1|A|U|2122
6YSU|1|A|G|2123
6YSU|1|A|G|2124
*
6YSU|1|A|C|2174
6YSU|1|A|C|2175
6YSU|1|A|A|2176
6YSU|1|A|C|2177
6YSU|1|A|C|2178
6YSU|1|A|C|2179
6YSU|1|A|U|2180
6YSU|1|A|U|2181
6YSU|1|A|U|2182
6YSU|1|A|A|2183

Current chains

Chain A

23S ribosomal RNA

Nearby chains