IL_6YSU_132

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSU_132 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1443

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6YSU|1|a|U|409
6YSU|1|a|G|410
6YSU|1|a|A|411
6YSU|1|a|A|412
6YSU|1|a|G|413
6YSU|1|a|A|414
6YSU|1|a|A|415
6YSU|1|a|G|416
*
6YSU|1|a|U|427
6YSU|1|a|G|428
6YSU|1|a|U|429
6YSU|1|a|A|430
6YSU|1|a|A|431
6YSU|1|a|A|432
6YSU|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4