IL_6YT9_034

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YT9_034 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0719

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6YT9|1|2|C|776
6YT9|1|2|A|777
6YT9|1|2|A|778
6YT9|1|2|A|779
6YT9|1|2|C|780
*
6YT9|1|2|G|796
6YT9|1|2|G|797
6YT9|1|2|U|798
6YT9|1|2|A|799
6YT9|1|2|G|800

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain l

30S ribosomal protein S11

Chain v

30S ribosomal protein S21