IL_6Z1P_002
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGGAUG*CUGAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_002 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.1292
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Z1P|1|Aa|A|25
6Z1P|1|Aa|U|26
6Z1P|1|Aa|G|27
6Z1P|1|Aa|G|28
6Z1P|1|Aa|A|29
6Z1P|1|Aa|U|30
6Z1P|1|Aa|G|31
*
6Z1P|1|Ab|C|408
6Z1P|1|Ab|U|409
6Z1P|1|Ab|G|410
6Z1P|1|Ab|A|411
6Z1P|1|Ab|A|412
6Z1P|1|Ab|A|413
6Z1P|1|Ab|U|414
Current chains
- Chain Aa
- LSU rRNA_1
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AD
- bL32m
- Chain AT
- Signal peptide-binding domain protein
- Chain Au
- 50S ribosomal protein L20
- Chain Aw
- Ribosomal protein L22/L17e
Coloring options: