IL_6Z1P_003

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUU*AU

Length

5 nucleotides

Bulged bases

6Z1P|1|Aa|U|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_003 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.2965

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6Z1P|1|Aa|A|73
6Z1P|1|Aa|U|74
6Z1P|1|Aa|U|75
*
6Z1P|1|Aa|A|116
6Z1P|1|Aa|U|117

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain AC

39-S ribosomal protein L47

Chain AI

Ribosomal protein L27

Chain AP

mL101

Chain Ay

50S ribosomal protein L24