IL_6Z1P_005

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGU*AUAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_005 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.1984

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Z1P|1|Aa|U|137
6Z1P|1|Aa|G|138
6Z1P|1|Aa|A|139
6Z1P|1|Aa|A|140
6Z1P|1|Aa|G|141
6Z1P|1|Aa|U|142
*
6Z1P|1|Aa|A|151
6Z1P|1|Aa|U|152
6Z1P|1|Aa|A|153
6Z1P|1|Aa|G|154
6Z1P|1|Aa|U|155
6Z1P|1|Aa|A|156
6Z1P|1|Aa|A|157

Current chains

Chain Aa

LSU rRNA_1

Nearby chains

Chain AB

Ribosomal protein L28

Chain AF

bL35m

Chain Ab

Large subunit ribosomal RNA; LSU rRNA