IL_6Z1P_012

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_012 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3625

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6Z1P|1|Ab|U|584
6Z1P|1|Ab|A|585
6Z1P|1|Ab|A|586
6Z1P|1|Ab|G|587
*
6Z1P|1|Ab|U|600
6Z1P|1|Ab|G|601
6Z1P|1|Ab|A|602
6Z1P|1|Ab|G|603

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AB

Ribosomal protein L28

Chain Ac

Ribosomal protein L2