IL_6Z1P_013

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUA*UUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_013 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1965

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6Z1P|1|Ab|C|613
6Z1P|1|Ab|U|614
6Z1P|1|Ab|U|615
6Z1P|1|Ab|A|616
*
6Z1P|1|Ab|U|631
6Z1P|1|Ab|U|632
6Z1P|1|Ab|G|633

Current chains

Chain Ab

LSU rRNA_2

Nearby chains