IL_6Z1P_014

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*UUAUC

Length

8 nucleotides

Bulged bases

6Z1P|1|Ab|G|651, 6Z1P|1|Ab|U|663, 6Z1P|1|Ab|A|664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_014 not in the Motif Atlas

Geometric match to IL_4V9F_030

Geometric discrepancy: 0.2263

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6Z1P|1|Ab|G|650
6Z1P|1|Ab|G|651
6Z1P|1|Ab|G|652
*
6Z1P|1|Ab|U|662
6Z1P|1|Ab|U|663
6Z1P|1|Ab|A|664
6Z1P|1|Ab|U|665
6Z1P|1|Ab|C|666

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2

Chain Aw

Ribosomal protein L22/L17e