IL_6Z1P_026

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAAA*UU

Length

6 nucleotides

Bulged bases

6Z1P|1|Ab|A|952

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_026 not in the Motif Atlas

Geometric match to IL_3NKB_002

Geometric discrepancy: 0.2546

The information below is about IL_3NKB_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6Z1P|1|Ab|A|951
6Z1P|1|Ab|A|952
6Z1P|1|Ab|A|953
6Z1P|1|Ab|A|954
*
6Z1P|1|Ab|U|965
6Z1P|1|Ab|U|966

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AG

Ribosomal protein

Chain AN

mL54

Chain Am

Ymf74

Chain An

Ribosomal protein L11, amine-terminal domain protein