IL_6Z1P_030
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_030 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1819
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Z1P|1|Ab|A|1137
6Z1P|1|Ab|U|1138
6Z1P|1|Ab|G|1139
6Z1P|1|Ab|A|1140
6Z1P|1|Ab|G|1141
6Z1P|1|Ab|U|1142
6Z1P|1|Ab|A|1143
6Z1P|1|Ab|G|1144
*
6Z1P|1|Ab|C|1730
6Z1P|1|Ab|G|1731
6Z1P|1|Ab|A|1732
6Z1P|1|Ab|A|1733
6Z1P|1|Ab|A|1734
6Z1P|1|Ab|U|1735
6Z1P|1|Ab|U|1736
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AD
- bL32m
- Chain Aa
- LSU rRNA_1
- Chain Ae
- 50S ribosomal protein L4
- Chain As
- 50S ribosomal protein L17
- Chain Au
- 50S ribosomal protein L20
- Chain Aw
- Ribosomal protein L22/L17e
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