IL_6Z1P_042

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAAC*GGAGAAA

Length

13 nucleotides

Bulged bases

6Z1P|1|Ab|G|1461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_042 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1224

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Ab|U|1448
6Z1P|1|Ab|G|1449
6Z1P|1|Ab|U|1450
6Z1P|1|Ab|A|1451
6Z1P|1|Ab|A|1452
6Z1P|1|Ab|C|1453
*
6Z1P|1|Ab|G|1458
6Z1P|1|Ab|G|1459
6Z1P|1|Ab|A|1460
6Z1P|1|Ab|G|1461
6Z1P|1|Ab|A|1462
6Z1P|1|Ab|A|1463
6Z1P|1|Ab|A|1464

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2

Chain Bb

Small subunit ribosomal RNA; SSU rRNA

Chain Bq

30S ribosomal protein S17