IL_6Z1P_043

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

6Z1P|1|Ab|A|1476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_043 not in the Motif Atlas

Geometric match to IL_4WF9_022

Geometric discrepancy: 0.3568

The information below is about IL_4WF9_022

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6Z1P|1|Ab|C|1470
6Z1P|1|Ab|U|1471
*
6Z1P|1|Ab|A|1475
6Z1P|1|Ab|A|1476
6Z1P|1|Ab|G|1477

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Bb

Small subunit ribosomal RNA; SSU rRNA