IL_6Z1P_044

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6Z1P|1|Ab|A|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_044 not in the Motif Atlas

Homologous match to IL_7RQB_069

Geometric discrepancy: 0.242

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6Z1P|1|Ab|G|1497
6Z1P|1|Ab|C|1498
*
6Z1P|1|Ab|G|1699
6Z1P|1|Ab|A|1700
6Z1P|1|Ab|C|1701

Current chains

Chain Ab

LSU rRNA_2

Nearby chains