IL_6Z1P_051

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_051 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.2322

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6Z1P|1|Ab|U|1742
6Z1P|1|Ab|U|1743
6Z1P|1|Ab|C|1744
*
6Z1P|1|Ab|G|1757
6Z1P|1|Ab|C|1758
6Z1P|1|Ab|A|1759

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AU

mL106

Chain Ad

50S ribosomal protein L3

Chain Ao

50S ribosomal protein L13