IL_6Z1P_054

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

6Z1P|1|Ab|U|1787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_054 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.177

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6Z1P|1|Ab|A|1786
6Z1P|1|Ab|U|1787
6Z1P|1|Ab|G|1788
*
6Z1P|1|Ab|C|2136
6Z1P|1|Ab|U|2137

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Aa

LSU rRNA_1

Chain Ae

50S ribosomal protein L4

Chain Aq

Ribosomal protein L15, putative