IL_6Z1P_059

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_059 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.1964

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6Z1P|1|Ab|A|2147
6Z1P|1|Ab|G|2148
*
6Z1P|1|Ab|C|2192
6Z1P|1|Ab|C|2193
6Z1P|1|Ab|U|2194

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3