IL_6Z1P_060

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_060 not in the Motif Atlas

Homologous match to IL_7RQB_092

Geometric discrepancy: 0.1621

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

6Z1P|1|Ab|G|2148
6Z1P|1|Ab|G|2149
*
6Z1P|1|Ab|C|2190
6Z1P|1|Ab|A|2191
6Z1P|1|Ab|C|2192

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AQ

mL102

Chain Ad

50S ribosomal protein L3

Chain Ar

Ribosomal protein L16