IL_6Z1P_070

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAAC*GAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_070 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.2028

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6Z1P|1|Ab|U|2341
6Z1P|1|Ab|A|2342
6Z1P|1|Ab|A|2343
6Z1P|1|Ab|C|2344
*
6Z1P|1|Ab|G|2364
6Z1P|1|Ab|A|2365
6Z1P|1|Ab|A|2366
6Z1P|1|Ab|A|2367

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain Ap

Ribosomal protein L14