IL_6Z1P_078

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAA*UUA

Length

7 nucleotides

Bulged bases

6Z1P|1|Ba|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_078 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1932

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6Z1P|1|Ba|U|56
6Z1P|1|Ba|U|57
6Z1P|1|Ba|A|58
6Z1P|1|Ba|A|59
*
6Z1P|1|Bb|U|546
6Z1P|1|Bb|U|547
6Z1P|1|Bb|A|548

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bl

Ribosomal protein S12

Chain Bp

30S ribosomal protein S16