IL_6Z1P_080

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUAAC*GAG

Length

9 nucleotides

Bulged bases

6Z1P|1|Ba|C|74, 6Z1P|1|Ba|A|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_080 not in the Motif Atlas

Geometric match to IL_6CZR_115

Geometric discrepancy: 0.3381

The information below is about IL_6CZR_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6Z1P|1|Ba|C|73
6Z1P|1|Ba|C|74
6Z1P|1|Ba|U|75
6Z1P|1|Ba|A|76
6Z1P|1|Ba|A|77
6Z1P|1|Ba|C|78
*
6Z1P|1|Bb|G|379
6Z1P|1|Bb|A|380
6Z1P|1|Bb|G|381

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bl

Ribosomal protein S12