IL_6Z1P_082

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUA*UA

Length

6 nucleotides

Bulged bases

6Z1P|1|Ba|U|90, 6Z1P|1|Ba|U|91

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_082 not in the Motif Atlas

Geometric match to IL_5J7L_005

Geometric discrepancy: 0.1398

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6Z1P|1|Ba|U|89
6Z1P|1|Ba|U|90
6Z1P|1|Ba|U|91
6Z1P|1|Ba|A|92
*
6Z1P|1|Ba|U|125
6Z1P|1|Ba|A|126

Current chains

Chain Ba

SSU rRNA_1

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain BD

IGR motif protein

Chain BV

mS90

Chain Bb

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

mS26

Chain Bz

mS34