IL_6Z1P_094

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

6Z1P|1|Bb|C|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_094 not in the Motif Atlas

Geometric match to IL_3SNP_003

Geometric discrepancy: 0.2847

The information below is about IL_3SNP_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6Z1P|1|Bb|A|342
6Z1P|1|Bb|C|343
6Z1P|1|Bb|G|344
*
6Z1P|1|Bb|C|360
6Z1P|1|Bb|U|361

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain Ap

Ribosomal protein L14

Chain Ba

SSU rRNA_1