IL_6Z1P_097

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_097 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1934

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6Z1P|1|Bb|C|429
6Z1P|1|Bb|G|430
6Z1P|1|Bb|A|431
6Z1P|1|Bb|A|432
6Z1P|1|Bb|G|433
6Z1P|1|Bb|A|434
6Z1P|1|Bb|A|435
6Z1P|1|Bb|G|436
*
6Z1P|1|Bb|U|447
6Z1P|1|Bb|G|448
6Z1P|1|Bb|U|449
6Z1P|1|Bb|A|450
6Z1P|1|Bb|A|451
6Z1P|1|Bb|A|452
6Z1P|1|Bb|G|453

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Be

Ymf76

Chain Bp

30S ribosomal protein S16