IL_6Z1P_108

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_108 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1522

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6Z1P|1|Bb|A|659
6Z1P|1|Bb|U|660
6Z1P|1|Bb|A|661
*
6Z1P|1|Bb|U|725
6Z1P|1|Bb|U|726
6Z1P|1|Bb|U|727

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bg

Ribosomal protein S6

Chain Bo

30S ribosomal protein S15

Chain Br

Ribosomal protein S18