IL_6Z1P_113

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAA*UAGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_113 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.216

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6Z1P|1|Bb|C|768
6Z1P|1|Bb|G|769
6Z1P|1|Bb|A|770
6Z1P|1|Bb|U|771
6Z1P|1|Bb|A|772
6Z1P|1|Bb|A|773
*
6Z1P|1|Bb|U|787
6Z1P|1|Bb|A|788
6Z1P|1|Bb|G|789
6Z1P|1|Bb|U|790
6Z1P|1|Bb|A|791
6Z1P|1|Bb|G|792

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Bk

Ymf61

Chain Bt

bS21m