IL_6Z1P_116

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6Z1P|1|Bb|G|904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_116 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.1695

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6Z1P|1|Bb|G|903
6Z1P|1|Bb|G|904
6Z1P|1|Bb|G|905
*
6Z1P|1|Bb|U|1401
6Z1P|1|Bb|U|1402

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BB

mS37

Chain Bk

Ymf61