IL_6Z1P_124

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

6Z1P|1|Bb|A|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_124 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.2017

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6Z1P|1|Bb|U|1033
6Z1P|1|Bb|G|1034
*
6Z1P|1|Bb|C|1207
6Z1P|1|Bb|A|1208
6Z1P|1|Bb|A|1209

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BX

Ribosomal protein S3

Chain Bd

Ymf64

Chain Bf

30S ribosomal protein S5

Chain Bj

Ymf59

Chain Bn

Ribosomal protein S14