IL_6Z1P_146

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAG*UGAGGA

Length

11 nucleotides

Bulged bases

6Z1P|1|Ab|G|604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_146 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.3436

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6Z1P|1|Ab|U|583
6Z1P|1|Ab|U|584
6Z1P|1|Ab|A|585
6Z1P|1|Ab|A|586
6Z1P|1|Ab|G|587
*
6Z1P|1|Ab|U|600
6Z1P|1|Ab|G|601
6Z1P|1|Ab|A|602
6Z1P|1|Ab|G|603
6Z1P|1|Ab|G|604
6Z1P|1|Ab|A|605

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AB

Ribosomal protein L28

Chain Ac

Ribosomal protein L2