IL_6Z1P_160

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAA*UAUU

Length

7 nucleotides

Bulged bases

6Z1P|1|Ab|A|2474, 6Z1P|1|Ab|U|2475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_160 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3584

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6Z1P|1|Ab|A|2331
6Z1P|1|Ab|A|2332
6Z1P|1|Ab|A|2333
*
6Z1P|1|Ab|U|2473
6Z1P|1|Ab|A|2474
6Z1P|1|Ab|U|2475
6Z1P|1|Ab|U|2476

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AU

mL106

Chain Ad

50S ribosomal protein L3

Chain Ao

50S ribosomal protein L13