IL_6Z1P_173
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAAA*UUGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_173 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.3729
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6Z1P|1|Bb|C|1271
6Z1P|1|Bb|A|1272
6Z1P|1|Bb|A|1273
6Z1P|1|Bb|A|1274
6Z1P|1|Bb|A|1275
*
6Z1P|1|Bb|U|1284
6Z1P|1|Bb|U|1285
6Z1P|1|Bb|G|1286
6Z1P|1|Bb|A|1287
6Z1P|1|Bb|G|1288
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain BA
- Ribosomal subunit protein
- Chain BF
- mS75
- Chain Bn
- Ribosomal protein S14
- Chain Bx
- mS31
- Chain By
- mS33
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