IL_6Z6J_002

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6Z6J|1|C1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1751

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6Z6J|1|C1|A|13
6Z6J|1|C1|U|14
6Z6J|1|C1|C|15
*
6Z6J|1|C3|G|144
6Z6J|1|C3|U|145

Current chains

Chain C1

25S rRNA

Chain C3

5.8S rRNA

Nearby chains

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A

Chain LX

60S ribosomal protein L25