IL_6Z6J_014
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_014 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0927
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Z6J|1|C1|G|404
6Z6J|1|C1|U|405
6Z6J|1|C1|G|406
6Z6J|1|C1|A|407
6Z6J|1|C1|A|408
6Z6J|1|C1|A|409
6Z6J|1|C1|U|410
*
6Z6J|1|C3|A|13
6Z6J|1|C3|C|14
6Z6J|1|C3|G|15
6Z6J|1|C3|G|16
6Z6J|1|C3|A|17
6Z6J|1|C3|U|18
6Z6J|1|C3|C|19
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LP
- 60S ribosomal protein L17-A
- Chain Le
- 60S ribosomal protein L32
Coloring options: