IL_6Z6J_018
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6Z6J|1|C1|A|519, 6Z6J|1|C1|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_018 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1274
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Z6J|1|C1|G|517
6Z6J|1|C1|G|518
6Z6J|1|C1|A|519
6Z6J|1|C1|U|520
6Z6J|1|C1|A|521
6Z6J|1|C1|A|522
6Z6J|1|C1|A|523
6Z6J|1|C1|U|524
6Z6J|1|C1|C|525
*
6Z6J|1|C1|G|567
6Z6J|1|C1|G|568
6Z6J|1|C1|A|569
6Z6J|1|C1|A|570
6Z6J|1|C1|U|571
6Z6J|1|C1|A|572
6Z6J|1|C1|C|573
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LF
- 60S ribosomal protein L7-A
- Chain LM
- 60S ribosomal protein L14-A
- Chain LS
- 60S ribosomal protein L20-A
Coloring options: