IL_6Z6J_024

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6Z6J|1|C1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_024 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.1202

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6Z6J|1|C1|C|752
6Z6J|1|C1|C|753
*
6Z6J|1|C1|G|779
6Z6J|1|C1|A|780
6Z6J|1|C1|G|781

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18-A

Chain La

60S ribosomal protein L28

Chain Lb

60S ribosomal protein L29