IL_6Z6J_031

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_031 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.1018

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6Z6J|1|C1|U|834
6Z6J|1|C1|G|835
6Z6J|1|C1|A|836
6Z6J|1|C1|A|837
6Z6J|1|C1|G|838
*
6Z6J|1|C1|U|855
6Z6J|1|C1|G|856
6Z6J|1|C1|G|857
6Z6J|1|C1|A|858
6Z6J|1|C1|G|859

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LR

60S ribosomal protein L19-A

Chain Lp

60S ribosomal protein L43-A