IL_6Z6J_056

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6Z6J|1|C1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_056 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3676

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6Z6J|1|C1|G|1234
6Z6J|1|C1|U|1235
6Z6J|1|C1|G|1236
6Z6J|1|C1|G|1237
6Z6J|1|C1|C|1238
*
6Z6J|1|C1|G|1250
6Z6J|1|C1|A|1251
6Z6J|1|C1|A|1252
6Z6J|1|C1|U|1253
6Z6J|1|C1|C|1254

Current chains

Chain C1

25S rRNA

Nearby chains