IL_6Z6J_063

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_063 not in the Motif Atlas

Geometric match to IL_7A0S_046

Geometric discrepancy: 0.1463

The information below is about IL_7A0S_046

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6Z6J|1|C1|G|1492
6Z6J|1|C1|G|1493
6Z6J|1|C1|U|1494
6Z6J|1|C1|U|1495
*
6Z6J|1|C1|A|1835
6Z6J|1|C1|C|1836

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LX

60S ribosomal protein L25

Chain Lg

60S ribosomal protein L34-A

Chain Lj

60S ribosomal protein L37-A

Chain Ll

60S ribosomal protein L39