IL_6Z6J_066
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCC*GCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_066 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3089
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6Z6J|1|C1|G|1560
6Z6J|1|C1|G|1561
6Z6J|1|C1|C|1562
6Z6J|1|C1|C|1563
*
6Z6J|1|C1|G|1577
6Z6J|1|C1|C|1578
6Z6J|1|C1|C|1579
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L8-A
- Chain LX
- 60S ribosomal protein L25
Coloring options: