IL_6Z6J_086
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAG*CG
- Length
- 6 nucleotides
- Bulged bases
- 6Z6J|1|C1|C|2197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_086 not in the Motif Atlas
- Homologous match to IL_5TBW_084
- Geometric discrepancy: 0.103
- The information below is about IL_5TBW_084
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6Z6J|1|C1|C|2196
6Z6J|1|C1|C|2197
6Z6J|1|C1|A|2198
6Z6J|1|C1|G|2199
*
6Z6J|1|C1|C|2245
6Z6J|1|C1|G|2246
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LA
- 60S ribosomal protein L2-A
Coloring options: