3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CCAG*CG
Length
6 nucleotides
Bulged bases
6Z6J|1|C1|C|2197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_086 not in the Motif Atlas
Homologous match to IL_5TBW_084
Geometric discrepancy: 0.103
The information below is about IL_5TBW_084
Detailed Annotation
Major groove intercalation
Broad Annotation
No text annotation
Motif group
IL_88739.5
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

6Z6J|1|C1|C|2196
6Z6J|1|C1|C|2197
6Z6J|1|C1|A|2198
6Z6J|1|C1|G|2199
*
6Z6J|1|C1|C|2245
6Z6J|1|C1|G|2246

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C2
Small subunit ribosomal RNA; SSU rRNA
Chain LA
60S ribosomal protein L2-A

Coloring options:


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