IL_6Z6J_100

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6Z6J|1|C1|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_100 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.2868

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6Z6J|1|C1|G|2714
6Z6J|1|C1|A|2715
6Z6J|1|C1|U|2716
*
6Z6J|1|C1|A|2740
6Z6J|1|C1|C|2741

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L42-A