IL_6Z6J_107

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_107 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0849

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6Z6J|1|C1|U|2835
6Z6J|1|C1|C|2836
6Z6J|1|C1|A|2837
6Z6J|1|C1|A|2838
6Z6J|1|C1|G|2839
*
6Z6J|1|C1|C|2849
6Z6J|1|C1|G|2850
6Z6J|1|C1|A|2851
6Z6J|1|C1|C|2852
6Z6J|1|C1|A|2853

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C5

Protein LSO2

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40