IL_6Z6J_129

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_129 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1786

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6Z6J|1|C1|C|3235
6Z6J|1|C1|U|3236
6Z6J|1|C1|U|3237
6Z6J|1|C1|G|3238
*
6Z6J|1|C1|C|3249
6Z6J|1|C1|U|3250
6Z6J|1|C1|U|3251
6Z6J|1|C1|G|3252

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L16-A