IL_6Z6J_135

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_135 not in the Motif Atlas

Homologous match to IL_9AXU_122

Geometric discrepancy: 0.1913

The information below is about IL_9AXU_122

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

6Z6J|1|C1|G|3340
6Z6J|1|C1|U|3341
6Z6J|1|C1|A|3342
*
6Z6J|1|C1|U|3363
6Z6J|1|C1|C|3364

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A